Information Package / Course Catalogue
| Course Code | : CSE451 |
| Course Type | : Area Elective |
| Couse Group | : First Cycle (Bachelor's Degree) |
| Education Language | : English |
| Work Placement | : N/A |
| Theory | : 2 |
| Prt. | : 2 |
| Credit | : 3 |
| Lab | : 0 |
| ECTS | : 6 |
The main objective of this course is to provide an understanding of bioinformatics from a computer engineering perspective and to develop the necessary perspective for conducting analyses.
Within the scope of this course, the theoretical foundations of acquiring biological data, which form the basis of bioinformatics, will be covered; the obtained data will then be analyzed and interpreted from a bioinformatics perspective using statistical methods, machine learning algorithms, and artificial intelligence techniques.
| 1. | Understand the fundamentals of bioinformatics |
| 2. | Interpret biological systems from a computer engineering perspective |
| 3. | Learn the analysis of large-scale biological data |
| 4. | Analyze genomic signal datasets using artificial intelligence and machine learning algorithms |
| 5. | Learn the multimodal data analysis applications |
| 1. | Gautam B. Singh, “Fundamentals of Bioinformatics and Computational Biology, 2nd Ed.”; Springer Cham, 2014, ISBN: 978-3-031-75696-2 |
| 2. | David A. Hendrix, “Applied Bioinformatics”, Hendrix Lab - Oregon State University |
| 3. | Supratim Choudhuri, “Bioinformatics for Beginners”; Elsevier Inc., 2014, ISBN: 978-0-12-410471-6 |
| 4. | Khalid Raza, “Machine Learning in Single-Cell RNA-seq Data Analysis”; Springer, 2024, ISBN: 978-9819767021 |
| Type of Assessment | Count | Percent |
|---|---|---|
| Attending Lectures | 6 | %5 |
| Assignment | 1 | %10 |
| Midterm Examination | 1 | %25 |
| Final Examination | 1 | %60 |
| Activities | Count | Preparation | Time | Total Work Load (hours) |
|---|---|---|---|---|
| Lecture - Theory | 14 | 2 | 3 | 70 |
| Lecture - Practice | 5 | 3 | 2 | 25 |
| Assignment | 1 | 0 | 5 | 5 |
| Seminar | 6 | 1 | 2 | 18 |
| Midterm Examination | 1 | 12 | 1 | 13 |
| Final Examination | 1 | 15 | 1 | 16 |
| TOTAL WORKLOAD (hours) | 147 | |||
PÇ-1 | PÇ-2 | PÇ-3 | PÇ-4 | PÇ-5 | PÇ-6 | PÇ-7 | PÇ-8 | PÇ-9 | PÇ-10 | PÇ-11 | |
OÇ-1 | 3 | 1 | 5 | ||||||||
OÇ-2 | 4 | 3 | 4 | 3 | 5 | ||||||
OÇ-3 | 2 | 4 | 2 | 3 | |||||||
OÇ-4 | 3 | 2 | 4 | ||||||||
OÇ-5 | 3 | 1 | 5 | ||||||||