Information Package / Course Catalogue
| Course Code | : MBTK643 |
| Course Type | : Area Elective |
| Couse Group | : Third Cycle (Doctorate Degree) |
| Education Language | : English |
| Work Placement | : N/A |
| Theory | : 3 |
| Prt. | : 0 |
| Credit | : 3 |
| Lab | : 0 |
| ECTS | : 10 |
The aim of this course help the students to learn the fundamentals of nucleic acid and protein sequence analysis and the analysis of complex biological systems using bioinformatic tools
The subject is Genomics, GenBank Sequence Database, Sequence Alignment, Gen Prediction and realated Programe (NCBI's Entrez, BLAST, PSI-BLAST, ClustalW, Pfam, BIOEDIT, GENEMARKER, SEQUIN, CAP3, ORF Finder, GENSCAN, MICROSATELLITE REPEATS FINDER)
| 1. | By the end of the course the students learn the basic concepts behind Bioinformatics and Computational Biology tools |
| 2. | Students will be able to define sequence analysis methods |
| 3. | Students will be able to state different application areas of sequence analysis |
| 4. | Students have knowledge about the details and area of usage of the most commonly used bioinformatic tools |
| 5. | Students have experience to use most important bioinformatic tools |
| 6. | Students will be able to interpret the results of sequence analysis methods |
| 1. | Bioinformatics, A practical Guide to the Analysis of Genes and proteins, A.D. Baxevanis ve B.F.F. Ouellette, 1998, ISBN0-471-19196-5 |
| Type of Assessment | Count | Percent |
|---|---|---|
| Presentation | 1 | %5 |
| Assignment | 1 | %5 |
| Midterm Examination | 1 | %20 |
| Final Examination | 1 | %70 |
| Activities | Count | Preparation | Time | Total Work Load (hours) |
|---|---|---|---|---|
| Lecture - Theory | 14 | 4 | 3 | 98 |
| Assignment | 1 | 18 | 2 | 20 |
| Presentation | 1 | 20 | 2 | 22 |
| Individual Work | 13 | 0 | 5 | 65 |
| Midterm Examination | 1 | 18 | 2 | 20 |
| Final Examination | 1 | 23 | 2 | 25 |
| TOTAL WORKLOAD (hours) | 250 | |||
PÇ-1 | PÇ-2 | PÇ-3 | PÇ-4 | PÇ-5 | PÇ-6 | PÇ-7 | PÇ-8 | PÇ-9 | PÇ-10 | PÇ-11 | PÇ-12 | PÇ-13 | |
OÇ-1 | 5 | 5 | 3 | 5 | 5 | 3 | 4 | 4 | 4 | 4 | 3 | 3 | 5 |
OÇ-2 | 5 | 5 | 3 | 5 | 5 | 3 | 4 | 4 | 4 | 4 | 3 | 3 | 5 |
OÇ-3 | 5 | 5 | 3 | 4 | 4 | 3 | 5 | 5 | 5 | 5 | 3 | 3 | 5 |
OÇ-4 | 5 | 5 | 3 | 4 | 4 | 3 | 5 | 5 | 5 | 5 | 3 | 3 | 5 |
OÇ-5 | 5 | 5 | 3 | 4 | 4 | 3 | 5 | 5 | 5 | 5 | 3 | 3 | 5 |
OÇ-6 | 5 | 5 | 3 | 4 | 4 | 3 | 5 | 5 | 5 | 5 | 3 | 3 | 5 |