Information Package / Course Catalogue
Species Identification Methods
Course Code: LBT135
Course Type: Area Elective
Couse Group: Short Cycle (Associate's Degree)
Education Language: Turkish
Work Placement: N/A
Theory: 2
Prt.: 0
Credit: 2
Lab: 0
ECTS: 2
Objectives of the Course

The objective of this course is to introduce students to classical and modern methods used for the identification of pathogens and harmful organisms at the species level in the fields of crop production, food, the environment, and health. The course will cover the basic principles, applications, advantages, and limitations of morphological, microscopic, biochemical, serological, and molecular diagnostic methods.

Course Content

The concept of species and the basic principles of taxonomy; biological sampling and specimen preparation methods; morphological and microscopic identification techniques; the use of identification keys; biochemical and serological identification methods; DNA-based molecular identification techniques; the barcoding approach; databases and digital identification systems; current approaches used in the identification of disease-causing and pest species.

Name of Lecturer(s)
Learning Outcomes
1.Explains the basic concepts and importance of species identification.
2.Explains the basic principles of taxonomic classification.
3.Defines the sampling and specimen preparation methods used in species identification.
4.Explains morphological and microscopic diagnostic methods.
5.Explains the principles of using diagnostic keys.
6.Compares the basic characteristics of biochemical and serological diagnostic methods.
7.Explains the basic principles of molecular diagnostic methods.
8.Defines PCR and DNA barcoding approaches.
9.Students will develop the ability to use digital databases and information sources for species identification.
10.Gains a basic understanding of how to select the appropriate method for identifying diseases and pests at the species level.
Recommended or Required Reading
1.Robert, I., Luckmann, M.W.H., Introduction to Insect Pest Management
2.The Journal of Molecular Diagnostics
3.Simpson, G.G., 1961. Principles of Animal Taxonomy
4.Barcode of Life Data Systems databases
5.Identification keys and taxonomic guides
6.Current scientific articles
Weekly Detailed Course Contents
Week 1 - Theoretical
Course introduction, the concept of species, and the importance of species identification.
Week 2 - Theoretical
Basic principles of taxonomy and classification systems.
Week 3 - Theoretical
Basic principles of taxonomy and classification systems.
Week 4 - Theoretical
Evaluation of morphological characteristics.
Week 5 - Theoretical
Microscopic diagnostic methods.
Week 6 - Theoretical
Use of diagnostic keys.
Week 7 - Theoretical
Imaging systems for species identification.
Week 8 - Theoretical
Digital tools in species identification. (Midterm Exam)
Week 9 - Theoretical
Biochemical diagnostic methods.
Week 10 - Theoretical
Serological diagnostic methods.
Week 11 - Theoretical
he role of molecular biology in species identification.
Week 12 - Theoretical
PCR and DNA-based diagnostic methods.
Week 13 - Theoretical
DNA barcoding and molecular databases.
Week 14 - Theoretical
Current approaches to species identification and case examples.
Assessment Methods and Criteria
Type of AssessmentCountPercent
Assignment1%5
Quiz1%5
Midterm Examination1%30
Final Examination1%60
Workload Calculation
ActivitiesCountPreparationTimeTotal Work Load (hours)
Lecture - Theory140228
Assignment1011
Quiz1516
Midterm Examination1617
Final Examination1718
TOTAL WORKLOAD (hours)50
Contribution of Learning Outcomes to Programme Outcomes
PÇ-1
PÇ-2
PÇ-3
PÇ-4
PÇ-5
PÇ-6
PÇ-7
PÇ-8
PÇ-9
PÇ-10
PÇ-11
PÇ-12
PÇ-13
PÇ-14
OÇ-1
4
2
2
1
1
1
OÇ-2
4
3
2
1
1
1
OÇ-3
3
4
1
2
1
1
2
4
1
1
2
OÇ-4
4
4
1
3
1
1
3
3
1
1
2
OÇ-5
3
3
4
1
1
1
1
2
OÇ-6
4
4
1
4
1
1
1
1
2
2
2
1
3
OÇ-7
4
4
4
1
2
1
1
2
2
1
3
OÇ-8
4
4
4
1
3
2
1
2
2
1
3
OÇ-9
3
3
1
3
2
4
2
1
1
1
3
OÇ-10
4
4
1
5
1
2
2
2
2
3
1
1
4
Adnan Menderes University - Information Package / Course Catalogue
2026