Information Package / Course Catalogue
Probiotics and Health
Course Code: BDB219
Course Type: Area Elective
Couse Group: First Cycle (Bachelor's Degree)
Education Language: Turkish
Work Placement: N/A
Theory: 2
Prt.: 0
Credit: 2
Lab: 0
ECTS: 4
Objectives of the Course

To teach students about the developmental processes of the gut microbiota from the fetal period through old age, as well as the structural and functional characteristics of prebiotic, probiotic, and synbiotic components; and to equip them with the skills to analyze the clinical mechanisms of action of these agents in gastrointestinal and metabolic diseases through evidence-based studies and at the level of specific bacterial strains, thereby enabling disease-specific dietary interventions and the prescribing of prebiotics and probiotics.

Course Content

The concepts of microbiota, microbiome, and dysbiosis; prebiotic criteria, inulin-type fructans (ITF), fructooligosaccharides (FOS), galactooligosaccharides (GOS), and human milk oligosaccharides (HMO); the taxonomy of probiotics and strain-specific characteristics; fetal, neonatal, and childhood microbiota development; SIBO, IBS, Leaky Gut, and Inflammatory Bowel Diseases (Ulcerative Colitis, Crohn’s Disease); The relationship between the microbiota and the use of probiotics in constipation, liver cirrhosis, non-alcoholic fatty liver disease (NAFLD), obesity, type 2 diabetes (T2DM), and lipid metabolism disorders; The role of probiotic strains in oncogenesis, cancer prevention, and the management of treatment-related complications (diarrhea) is discussed.

Name of Lecturer(s)
Ins. Mahmut ÇERİ
Learning Outcomes
1.It defines the concepts of microbiota, microbiome, dysbiosis, prebiotics, and functional foods, and explains the differences between them.
2.It elucidates the structural criteria of prebiotic components (ITF, FOS, GOS, HMO) and the fermentation mechanisms in the host flora.
3.It analyzes prenatal, neonatal, and environmental factors (mode of delivery, diet, antibiotics) that influence the composition of the microbiota from the fetal period through old age
4.For gastrointestinal disorders (SIBO, IBS, ulcerative colitis, Crohn’s disease, constipation), selects and administers specific probiotic strains and dosages based on evidence aligned with the pathophysiology.
5.Discusses the role of the gut microbiota and short-chain fatty acids (such as butyrate) in chronic complex diseases such as metabolic syndrome, obesity, type 2 diabetes, NAFLD, and cancer, based on the clinical literature, and develops intervention strategies
6.Designs safe nutrition protocols by evaluating the risks associated with probiotic use (bacteremia, sepsis) and drug-probiotic interactions in critically ill and immunocompromised patient groups using clinical parameters.
Recommended or Required Reading
1.He M, et al. Antibiotic-induced microbiota perturbation and metabolome alterations. Molecular Omics. 2023;19(2):135-145. DOI: 10.1039/d2mo00284a
2.DeJong EN, et al. Aging and dysbiosis: Simplified community structure and dominance shifts. Cell Host & Microbe. 2020;28(1):126-138. DOI: 10.1016/J.CHOM.2020.07.013
3.Maghsoumi-Norouzabad L, et al. The Effects of Prebiotic Dietary Fibers, Probiotics, and Synbiotics on Gut Permeability and Immunity: A Systematic Review. Nutrients
4.Tyrsin OY, et al. Lactobacillus reuteri for infant colic. European Journal of Pediatrics. 2024;183(3):1245-1253. DOI: 10.1007/s00431-024-05473-y
5.Liu F, et al. Inulin supplementation and metabolic effects in overweight/obese individuals. BMC Medicine. 2025;23:189. DOI: 10.1186/s12916-025-04189-6
6.Almalki AS, et al. Efficacy of probiotics in IBS: A systematic review and meta-analysis. Medicina. 2025;62(1):89. DOI: 10.3390/medicina62010089
Weekly Detailed Course Contents
Week 1 - Theoretical
Introduction, Functional Foods, and Microbiota Terminology
Week 2 - Theoretical
Definition, Criteria, and Classification of Prebiotics
Week 3 - Theoretical
Types of Prebiotics and Fermentation Mechanisms
Week 4 - Theoretical
Dosages, Safety, and Clinical Side Effects of Prebiotics
Week 5 - Theoretical
Microbiota in the Life Cycle—Part I: Fetal Life, Birth, and the Neonatal Period
Week 6 - Theoretical
The Microbiome Across the Life Cycle—Part II: Childhood, Adulthood, and Old Age
Week 7 - Theoretical
Definition, Selection Criteria, and Contraindications of Probiotics (Midterm Exam)
Week 8 - Theoretical
Probiotic-Drug Interactions and Clinical Prescribing Guidelines (Analysis of Midterm Exam Questions)
Week 9 - Theoretical
Probiotics in Gastrointestinal Disorders-I: SIBO, IBS, and Leaky Gut
Week 10 - Theoretical
Probiotics in Gastrointestinal Disorders-II: Inflammatory Bowel Diseases (IBD)
Week 11 - Theoretical
Probiotics in Metabolic Diseases - Part I: Obesity and Lipid Metabolism
Week 12 - Theoretical
Probiotics in Metabolic Diseases—Part II: Type 2 Diabetes (T2DM) and Liver Diseases
Week 13 - Theoretical
Oncology, Microbiota, and Probiotics: Cancer Prevention and Management
Week 14 - Theoretical
An analysis of probiotics available on the market
Assessment Methods and Criteria
Type of AssessmentCountPercent
Quiz1%1
Midterm Examination1%39
Final Examination1%60
Workload Calculation
ActivitiesCountPreparationTimeTotal Work Load (hours)
Lecture - Theory134278
Quiz1202
Midterm Examination110111
Final Examination110111
TOTAL WORKLOAD (hours)102
Contribution of Learning Outcomes to Programme Outcomes
PÇ-1
PÇ-2
PÇ-3
PÇ-4
PÇ-5
PÇ-6
PÇ-7
PÇ-8
PÇ-9
PÇ-10
OÇ-1
4
3
OÇ-2
4
4
OÇ-3
4
4
4
OÇ-4
5
5
4
OÇ-5
5
4
5
5
4
OÇ-6
4
5
4
4
3
Adnan Menderes University - Information Package / Course Catalogue
2026